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- Scientific projects
- Grid computing
- Decrypthon program
- Role-players
- Partners
- Thierry Lhermitte godfather
Bibliographical references
Grid computing
Oral communications :
- Viktors Bertis (IBM), Raphaël Bolze (CNRS), Frédéric Desprez (INRIA), Kevin Reed (IBM). Large Scale Execution of a Bioinformatic Application on a Volunteer Grid Workshop. The 9th IEEE International Workshop on Parallel and Distributed Scientific and Engineering Computing (PDSEC-08), April 14th-18th 2008, Miami, FL, USA.
Posters :
- Raphaël Bolze, Frédéric Desprez, Philippe d'Anfray. Les Journée Réseaux JRES-2007, Nov 20th-23rd 2007, Strasbourg, France.
MS2PH (from Structural Mutation to Human Pathologies Phenotype)
Publications:
- Garnier N, Friedrich A, Bolze R, Bettler E, Moulinier L, Geourjon C, Thompson JD, Deléage G, Poch O. MAGOS: multiple alignment and modelling server. Bioinformatics. 2006 Sep 1;22(17):2164-5.
- Friedrich A, Ripp R, Garnier N, Bettler E, Deléage G, Poch O, Moulinier L. Blast sampling for structural and functional analyses. BMC Bioinformatics. 2007 Feb 23;8:62.
Oral communications:
- Friedrich A, Moulinier L, Ripp R, Garnier N, Bettler E, Deléage G and Poch O. BLAST Sampling for Structural Analysis. JOBIM, July 2005, Lyon, France.
- Friedrich A, Nguyen H. MS2PH Data Grid or Federation of Distributed BioMedical Datasources. ISIBio, November 2006, Nancy, France.
- Garnier N, Combet C, Geourjon C, Deleage G, Bettler E. Modeome: un système de création et de gestion de modèles 3D de proteins. JOBIM, July 2007, Marseille, France.
- Hoan Nguyen, Anne Friedrich, Guillaume Berthommier, Laetitia Poidevin, Luc Moulinier, Raymond Ripp, Olivier Poch. Introduction du nouveau Centre de Données Biomedicales Décrypthon. CORIA 2008.
Posters:
- Garnier N, Friedrich A, Nguyen H, Bettler E, Moulinier L, Geourjon C, Deléage G, Poch O. MAGOS: Multiple AliGnment and mOdelling Server. JOBIM, July 2006, Bordeaux, France.
- Friedrich A, Garnier N, Nguyen H, Bettler E, Deléage G, Poch O and Moulinier L. MS2PH-db: a new database to analyse proteins implicated in human genetic diseases. JOBIM, July 2006, Bordeaux, France.
- Nguyen H, Friedrich A, Benabbou Y, Moulinier L, Poche O. Introduction au nouveau centre de données Decrypthon. JOBIM, July 2007, Marseille, France.
- Garnier N, Combet C, Geourjon C, Deleage G, Bettler E. Modeome: un système de création et de gestion de modèles 3D de proteins. JOBIM, July 2007, Marseille, France.
Thesis:
- Friedrich A. De la mutation structurale aux phénotypes des pathologies humaines : vers une approche intégrative des mutations et de leurs conséquences. (Dec, 21st 2007).
Development and use of computing and theorical approaches to analyse links between splicing defects and genetical diseases.
Publications:
- Mitrasinovic PM. On the structural features of hairpin triloops in rRNA: from nucleotide to global conformational change upon ligand binding. J Struct Biol. 2006 Mar;153(3):207-22.
Large scale investigation of protein-protein, protein-DNA and protein-ligand interactions leading to drug targeting.
Posters:
- S. Sacquin-Mora, A. Carbone et R. Lavery. Large scale investigation of protein-protein interactions via cross docking simulations and Evolutionary Trace methods. M2Cell, Workshop on Modeling from Macromolecules to Cells, Abbaye de Fontevraud, France, Dec 2005.
- S. Sacquin-Mora, A. Carbone et R. Lavery. Coupling of cross-docking simulations and Evolutionary Trace methods for the pre-diction of protein-protein interactions. Keystone Symposia on Multi-Protein Complexes Involved in Cell Regulation, Cambridge, UK, Aug 2006.
Parallelisation of a Monte Carlo method to sort action potentials: amelioration of a tool for neuroscience fundamental research and neuromuscular disease diagnosis.
Oral communications:
- C. Pouzat, A. Ridolfi and P. Viot. Spike Sorting with R and GGobi. Congrès "use R" des utilisateurs de R à Vienne, June, 15th-17th 2006.
- C. Pouzat. Residuals and statistical tests for spike train models: applications to odour responses af antennal lobe neurons recorded from Periplaneta americana. Congrès de l'ESITO, Roscoff, Sept 15th-22nd 2007.
Posters:
- C. Pouzat, A. Ridolfi and P. Viot. Spike Sorting with R and GGobi. Congrès "use R" des utilisateurs de R à Vienne, June 15th-17th 2006.
- C. Pouzat, A. Ridolfi1 and P. Viot. Parallelization of clustering and classification codes without headache using R and the "Simple Network of Workstations" package. JOBIM, Bordeaux, France July 5th-7th 2006.
Animal transcriptom datamining to footnote human genome neuromuscular processes.
Oral communications:
- M. Robinson-Rechavi and G. Parmentier. A new ontology for gene expression evolution, OGee, provides a link between evo-devo and genome evolution in vertebrates. First and founding meeting of the European society for Evolutionary Developmental biology, Prague, August 16-19, 2006.
Posters:
- G. Parmentier and M. Robinson-Rechavi. OGee: an ontology for gene expression evolution in vertebrates. JOBIM, Bordeaux, July 5-7, 2006.
- G. Parmentier and M. Robinson-Rechavi. BGee: a database for gene expression pattern evolution. First and founding meeting of the European society for Evolutionary Developmental biology, Prague, August 16-19, 2006.
- G. Parmentier and M. Robinson-Rechavi. Using ontology alignment to add homology relationships be-tween species anatomy ontologies. ISMB-ECCB Bioontologies SIG workshop, Vienna, 2007.
